PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3961_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 269aa    MW: 28578.4 Da    PI: 8.3767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3961_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-0977102227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    kt+lC+ +     Ck+Gd+C+FaHg+
  Neem_3961_f_3  77 KTRLCNKYNTAEGCKFGDKCHFAHGE 102
                    8***********************96 PP

2zf-CCCH382.8e-12236260126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC++fa+ G C +GdrC+FaHg
  Neem_3961_f_3 236 FKTKLCDNFAK-GSCTFGDRCHFAHG 260
                    69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.662736IPR000571Zinc finger, CCCH-type
PfamPF146082.72333No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-1473106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-874106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.53575103IPR000571Zinc finger, CCCH-type
SMARTSM003560.001375102IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-677102IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.41E-15139216IPR004088K Homology domain, type 1
SMARTSM003227.5E-13145215IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.7E-16146214IPR004088K Homology domain, type 1
PROSITE profilePS5008414.11146210IPR004088K Homology domain, type 1
PfamPF000131.4E-11148212IPR004088K Homology domain, type 1
CDDcd001054.28E-14150210No hitNo description
Gene3DG3DSA:4.10.1000.108.1E-17233266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.774235262IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-8235261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-9235265IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10236260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDCMNSYSYI KDCKECVICT SGCPFGEGCH FLHYVPGGFK AVSQMLNLSG TPALPPSNRN  60
SAVPPSFPDG SSPPAVKTRL CNKYNTAEGC KFGDKCHFAH GEWELGRPTA PSYEDPRAMG  120
PISGRMGGRV EPPHQSLGAA ASFGASATAK ISIDAKLAGA IIGKNGVNSK QICRLTGAKL  180
SIRDHEADPN LRNIELEGTF DQIKQASAMV RELIVNVGSG SGHSMKSNSS ASSNNFKTKL  240
CDNFAKGSCT FGDRCHFAHG AEELRKSVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.11e-155PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-104C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067JK641e-152A0A067JK64_JATCU; Uncharacterized protein
STRINGGLYMA10G44330.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-52C3H family protein